R Graphing References
Michelle (Collura) Ouellette December 8, 2017
Base Plots:
[https://www.statmethods.net/advgraphs/parameters.html]
- General graphing parameters (used by function par() among other functions)
[https://www.statmethods.net/advgraphs/layout.html]
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Combining Plots into one window (not overlapping them)
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Uses functions par(), layout()
Other Plots:
[https://cran.r-project.org/web/packages/corrplot/vignettes/corrplot-intro.html]
- Uses and customization for the function corrplot()
[https://ase.tufts.edu/bugs/guide/assets/R%20Graphics%20Cookbook.pdf]
- R Graphics Cookbook (Textbook)
[https://google.github.io/styleguide/Rguide.xml]
- Google’s R Style Guide
- Package factoextra
ggplot:
[https://www.rstudio.com/wp-content/uploads/2015/03/ggplot2-cheatsheet.pdf]
- Cheatsheet - basic layers
[http://ggplot2.tidyverse.org/reference/]
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ggplot basics and function reference
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geom layers
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stat layers
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position adjustment layers
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annotations layers
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aesthetics layers
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scale layers
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axes and legends
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facetting and facetting layers
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coordinate systems
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themes
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programming with ggplot2
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vector helpers
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built in datasets
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autoplot and fortify
[http://sape.inf.usi.ch/quick-reference/ggplot2/colour]
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quick reference for colors in ggplot2
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predefined colour names
[http://www.cookbook-r.com/Graphs/]
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various graphs you can make with ggplot2 with options for customization
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bar, line, distributions, scatterplots
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titles, axes, legends, lines, facets, multiple graphs on one page, colors
- cheatsheet for customizing graphics and legends for ggplot2
[https://github.com/tidyverse/ggplot2/wiki/Legend-Attributes]
- legend basics for ggplot2
[http://www.cookbook-r.com/Graphs/Legends_(ggplot2)/#changing-the-order-of-items-in-the-legend]
- legend customization in ggplot2
[http://ggplot2.tidyverse.org/reference/theme.html]
- modifying components of a theme in ggplot2
- Using a variable value in a title for ggplot2
[https://learnr.files.wordpress.com/2009/08/latbook.pdf]
- using lattice for multivariate data visualization with ggplot2
[http://ggplot2.tidyverse.org/reference/geom_density.html]
- arguments and aesthetics for geomdensity() and statdensity()
[http://t-redactyl.io/blog/2016/02/creating-plots-in-r-using-ggplot2-part-7-histograms.html]
- histograms in ggplot2 with customization options
[http://www.cookbook-r.com/Graphs/Plotting_means_and_error_bars_(ggplot2)/]
- plotting means and error bars in ggplot2
[http://ggplot2.tidyverse.org/reference/geom_boxplot.html]
- arguments and aesthetics for box and whisker plots in ggplot2
[https://plot.ly/ggplot2/box-plots/]
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boxplot customization in ggplot2
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Uses function geomboxplot()
[https://stackoverflow.com/questions/14604439/plot-multiple-boxplot-in-one-graph]
- plotting multiple boxplots in one graph
[https://rpubs.com/danmirman/plotting_factor_analysis]
- plotting factor analysis results in ggplot2
[http://rstudio-pubs-static.s3.amazonaws.com/3365_9573f6d661b444499365fe1841ee65d3.html]
- plotting functions in ggplot2
[https://stackoverflow.com/questions/31079210/how-can-i-add-annotations-below-the-x-axis-in-ggplot2]
- adding annotations below a graph in ggplot2
[http://www.cookbook-r.com/Graphs/Plotting_distributions_(ggplot2)/]
- plotting distributions using histograms, density plots, and box plots in ggplot2
[http://t-redactyl.io/blog/2016/03/creating-plots-in-r-using-ggplot2-part-9-function-plots.html]
- function plots in ggplot2
[http://www.sthda.com/english/wiki/ggplot2-colors-how-to-change-colors-automatically-and-manually]
- changing plot colors automatically and manually in ggplot2
[https://cran.r-project.org/web/packages/ggfortify/vignettes/plot_pca.html]
- plotting PCA in ggplot2
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diagnostic plots for GLMS.
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Uses function autoplot() and library ggfortify
[https://stackoverflow.com/questions/31185522/q-ggbiplot-foreground-arrows-change-arrow-color]
- adjusting layer order in ggplot2
- changing color, transparency, and position of arrows in PCA using function ggbiplot()
Color:
[https://www.rapidtables.com/web/color/RGB_Color.html]
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Provides RGB Color Codes with a variety of methods to choose the color
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Provides Hex #, RGB #s, Calculations
[http://www.dataanalytics.org.uk/Data%20Analysis/TipsAndTricks/TTR-20150531.htm]
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How to make colors transparent (using your own function)
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Uses functions rgb(), col2rgb()
- Hex Color Codes
[https://cran.r-project.org/web/packages/colorspace/vignettes/hcl-colors.pdf]
- HCL-Based Color Palettes in R
[https://stat.ethz.ch/R-manual/R-devel/library/grDevices/html/palettes.html]
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Color Palettes
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References functions rainbow(), heat.colors(), terrain.colors(), topo.colors(), cm.colors()
[http://sape.inf.usi.ch/quick-reference/ggplot2/colour]
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quick reference for colors in ggplot2
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predefined colour names
[http://www.sthda.com/english/wiki/ggplot2-colors-how-to-change-colors-automatically-and-manually]
- changing plot colors automatically and manually in ggplot2
[https://www.nceas.ucsb.edu/~frazier/RSpatialGuides/colorPaletteCheatsheet.pdf]
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R Color Cheatsheet
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Uses a variety of functions for baseplot graphs and ggplot graphs
